Published on in Vol 23, No 1 (2021): January

Preprints (earlier versions) of this paper are available at https://preprints.jmir.org/preprint/19689, first published .
Use of BERT (Bidirectional Encoder Representations from Transformers)-Based Deep Learning Method for Extracting Evidences in Chinese Radiology Reports: Development of a Computer-Aided Liver Cancer Diagnosis Framework

Use of BERT (Bidirectional Encoder Representations from Transformers)-Based Deep Learning Method for Extracting Evidences in Chinese Radiology Reports: Development of a Computer-Aided Liver Cancer Diagnosis Framework

Use of BERT (Bidirectional Encoder Representations from Transformers)-Based Deep Learning Method for Extracting Evidences in Chinese Radiology Reports: Development of a Computer-Aided Liver Cancer Diagnosis Framework

Journals

  1. Deng L, Chen L, Yang T, Liu M, Li S, Jiang T. Constructing High-Fidelity Phenotype Knowledge Graphs for Infectious Diseases With a Fine-Grained Semantic Information Model: Development and Usability Study. Journal of Medical Internet Research 2021;23(6):e26892 View
  2. Huang Y, Wang N, Zhang Z, Liu H, Fei X, Wei L, Chen H. Patient Representation From Structured Electronic Medical Records Based on Embedding Technique: Development and Validation Study. JMIR Medical Informatics 2021;9(7):e19905 View
  3. Çavdar İ, Feryad V. Efficient Design of Energy Disaggregation Model with BERT-NILM Trained by AdaX Optimization Method for Smart Grid. Energies 2021;14(15):4649 View
  4. Zaman S, Petri C, Vimalesvaran K, Howard J, Bharath A, Francis D, Peters N, Cole G, Linton N. Automatic Diagnosis Labeling of Cardiovascular MRI by Using Semisupervised Natural Language Processing of Text Reports. Radiology: Artificial Intelligence 2022;4(1) View
  5. Wang K, Gao B, Liu H, Chen H, Liu H. The Real-Time and Patient-Specific Prediction for Duration and Recovery Profile of Cisatracurium Based on Deep Learning Models. Frontiers in Pharmacology 2022;12 View
  6. Donnelly L, Grzeszczuk R, Guimaraes C. Use of Natural Language Processing (NLP) in Evaluation of Radiology Reports: An Update on Applications and Technology Advances. Seminars in Ultrasound, CT and MRI 2022;43(2):176 View
  7. Feng Y, Qi L, Tian W. PhenoBERT: A Combined Deep Learning Method for Automated Recognition of Human Phenotype Ontology. IEEE/ACM Transactions on Computational Biology and Bioinformatics 2023;20(2):1269 View
  8. Zhang Y, Grant B, Hope A, Hung R, Warkentin M, Lam A, Aggawal R, Xu M, Shepherd F, Tsao M, Xu W, Pakkal M, Liu G, McInnis M. Using Recurrent Neural Networks to Extract High-Quality Information From Lung Cancer Screening Computerized Tomography Reports for Inter-Radiologist Audit and Feedback Quality Improvement. JCO Clinical Cancer Informatics 2023;(7) View
  9. Yang Y, Lu Y, Yan W. A comprehensive review on knowledge graphs for complex diseases. Briefings in Bioinformatics 2023;24(1) View
  10. Liu W, Zhang X, Lv H, Li J, Liu Y, Yang Z, Weng X, Lin Y, Song H, Wang Z. Using a classification model for determining the value of liver radiological reports of patients with colorectal cancer. Frontiers in Oncology 2022;12 View
  11. Kuling G, Curpen B, Martel A. BI-RADS BERT and Using Section Segmentation to Understand Radiology Reports. Journal of Imaging 2022;8(5):131 View
  12. Binsfeld Gonçalves L, Nesic I, Obradovic M, Stieltjes B, Weikert T, Bremerich J. Natural Language Processing and Graph Theory: Making Sense of Imaging Records in a Novel Representation Frame. JMIR Medical Informatics 2022;10(12):e40534 View
  13. Kim H, Park Y, Park Y, Choi E, Kim S, You H, Bae Y. Identifying Alcohol-Related Information From Unstructured Bilingual Clinical Notes With Multilingual Transformers. IEEE Access 2023;11:16066 View
  14. Moon J, Lee H, Shin W, Kim Y, Choi E. Multi-Modal Understanding and Generation for Medical Images and Text via Vision-Language Pre-Training. IEEE Journal of Biomedical and Health Informatics 2022;26(12):6070 View
  15. Olthof A, van Ooijen P, Cornelissen L. Deep Learning-Based Natural Language Processing in Radiology: The Impact of Report Complexity, Disease Prevalence, Dataset Size, and Algorithm Type on Model Performance. Journal of Medical Systems 2021;45(10) View
  16. Li J, Lin Y, Zhao P, Liu W, Cai L, Sun J, Zhao L, Yang Z, Song H, Lv H, Wang Z. Automatic text classification of actionable radiology reports of tinnitus patients using bidirectional encoder representations from transformer (BERT) and in-domain pre-training (IDPT). BMC Medical Informatics and Decision Making 2022;22(1) View
  17. Park W, Siddiqui I, Chakraborty C, Qureshi N, Shin D. Scarcity-aware spam detection technique for big data ecosystem. Pattern Recognition Letters 2022;157:67 View
  18. Wan C, Feng W, Ma R, Ma H, Wang J, Huang R, Zhang X, Jing M, Yang H, Yu H, Liu Y. Association between depressive symptoms and diagnosis of diabetes and its complications: A network analysis in electronic health records. Frontiers in Psychiatry 2022;13 View
  19. Abbasi N, Lacson R, Kapoor N, Licaros A, Guenette J, Burk K, Hammer M, Desai S, Eappen S, Saini S, Khorasani R. Development and External Validation of an Artificial Intelligence Model for Identifying Radiology Reports Containing Recommendations for Additional Imaging. American Journal of Roentgenology 2023;221(3):377 View
  20. Yang L, Huang X, Wang J, Yang X, Ding L, Li Z, Li J. Identifying stroke-related quantified evidence from electronic health records in real-world studies. Artificial Intelligence in Medicine 2023;140:102552 View
  21. Cai J, Chen S, Guo S, Wang S, Li L, Liu X, Zheng K, Liu Y, Chen S. RegEMR: a natural language processing system to automatically identify premature ovarian decline from Chinese electronic medical records. BMC Medical Informatics and Decision Making 2023;23(1) View
  22. Balamurugan R, Mohite S, Raja S. Protein Sequence Classification Using Bidirectional Encoder Representations from Transformers (BERT) Approach. SN Computer Science 2023;4(5) View
  23. Lee K, Liu Z, Chandran U, Kalsekar I, Laxmanan B, Higashi M, Jun T, Ma M, Li M, Mai Y, Gilman C, Wang T, Ai L, Aggarwal P, Pan Q, Oh W, Stolovitzky G, Schadt E, Wang X. Detecting Ground Glass Opacity Features in Patients With Lung Cancer: Automated Extraction and Longitudinal Analysis via Deep Learning–Based Natural Language Processing. JMIR AI 2023;2:e44537 View
  24. Wang Y, Zhang W, Yang Y, Sun J, Wang L. Survival Prediction of Esophageal Squamous Cell Carcinoma Based on the Prognostic Index and Sparrow Search Algorithm-Support Vector Machine. Current Bioinformatics 2023;18(7):598 View
  25. Reisinezhad P, Fakhrahmad M. Induction of knowledge, attitude and practice of people toward a pandemic from Twitter: a comprehensive model based on opinion mining. Kybernetes 2023;52(7):2507 View
  26. Qiu Y, Fang J. Application of Knowledge Sharing Decision Model Based on Computer-Aided System in Student Education Management Platform. International Journal of Knowledge Management 2024;20(1):1 View
  27. Gorenstein L, Konen E, Green M, Klang E. Bidirectional Encoder Representations from Transformers in Radiology: A Systematic Review of Natural Language Processing Applications. Journal of the American College of Radiology 2024;21(6):914 View
  28. Wang L, Ma Y, Bi W, Lv H, Li Y. An Entity Extraction Pipeline for Medical Text Records Using Large Language Models: Analytical Study. Journal of Medical Internet Research 2024;26:e54580 View
  29. Wu Z, Xu D, Hu P, Li L, Huang T. A meta-path, attention-based deep learning method to support hepatitis carcinoma predictions for improved cirrhosis patient management. Decision Support Systems 2024;181:114226 View
  30. Gu K, Lee J, Shin J, Hwang J, Min J, Jeong W, Lee M, Song K, Bae S. Using GPT‐4 for LI‐RADS feature extraction and categorization with multilingual free‐text reports. Liver International 2024;44(7):1578 View
  31. Reichenpfader D, Müller H, Denecke K. A scoping review of large language model based approaches for information extraction from radiology reports. npj Digital Medicine 2024;7(1) View
  32. Valente A, Trunfio T, Aiello M, Baldi D, Baldi M, Imbò S, Russo M, Cavaliere C, Franzese M. Text mining approach for feature extraction and cartilage disease grade classification using knee MRI radiology reports. Computational and Structural Biotechnology Journal 2024;24:622 View
  33. Jeon J, Cho S, Lee D, Lee C, Kim J. BioBridge: Unified Bio-Embedding With Bridging Modality in Code-Switched EMR. IEEE Access 2024;12:141866 View

Books/Policy Documents

  1. Karaca Y, Zhang Y, Dursun A, Wang S. Multi-Chaos, Fractal and Multi-Fractional Artificial Intelligence of Different Complex Systems. View
  2. González Esparza H, Florencia R, Díaz Román J, Mendoza-Carreón A. Innovations in Machine and Deep Learning. View
  3. Barua R, Datta S. Applications, Challenges, and the Future of ChatGPT. View
  4. Barua R, Datta S. Navigating the Augmented and Virtual Frontiers in Engineering. View