This paper is in the following e-collection/theme issue:

Digital Health Reviews (1271) Natural Language Processing (686) Ontologies, Classifications, and Coding (237) Secondary Use of Clinical Data for Research and Surveillance (362) Standards and Interoperability (72)

Published on in Vol 23, No 1 (2021): January

Preprints (earlier versions) of this paper are available at https://preprints.jmir.org/preprint/24594, first published .
Use of the Systematized Nomenclature of Medicine Clinical Terms (SNOMED CT) for Processing Free Text in Health Care: Systematic Scoping Review

Use of the Systematized Nomenclature of Medicine Clinical Terms (SNOMED CT) for Processing Free Text in Health Care: Systematic Scoping Review

Use of the Systematized Nomenclature of Medicine Clinical Terms (SNOMED CT) for Processing Free Text in Health Care: Systematic Scoping Review

Authors of this article:

Christophe Gaudet-Blavignac1, 2 Author Orcid Image ;   Vasiliki Foufi1, 2 Author Orcid Image ;   Mina Bjelogrlic1, 2 Author Orcid Image ;   Christian Lovis1, 2 Author Orcid Image
Article Authors Cited by (35) Tweetations (5) Metrics

Journals

  1. Deng L, Chen L, Yang T, Liu M, Li S, Jiang T. Constructing High-Fidelity Phenotype Knowledge Graphs for Infectious Diseases With a Fine-Grained Semantic Information Model: Development and Usability Study. Journal of Medical Internet Research 2021;23(6):e26892 View
  2. Gaudet-Blavignac C, Raisaro J, Touré V, Österle S, Crameri K, Lovis C. A National, Semantic-Driven, Three-Pillar Strategy to Enable Health Data Secondary Usage Interoperability for Research Within the Swiss Personalized Health Network: Methodological Study. JMIR Medical Informatics 2021;9(6):e27591 View
  3. Vuokko R, Vakkuri A, Palojoki S. Systematized Nomenclature of Medicine–Clinical Terminology (SNOMED CT) Clinical Use Cases in the Context of Electronic Health Record Systems: Systematic Literature Review. JMIR Medical Informatics 2023;11:e43750 View
  4. Butt M, Okumus N, Jabri A, Thomas C, Tarabichi Y, Karim S. Early Versus Late Catheter Ablation of Atrial Fibrillation and Risk of Permanent Pacemaker Implantation in Patients With Underlying Sinus Node Dysfunction. Journal of the American Heart Association 2022;11(17) View
  5. Khano S, Sanci L, Woolfenden S, Zurynski Y, Dalziel K, Liaw S, Boyle D, Freed G, Moore C, Hodgins M, Le J, Morris T, Germano S, Wheeler K, Lingam R, Hiscock H. Strengthening Care for Children (SC4C): protocol for a stepped wedge cluster randomised controlled trial of an integrated general practitioner-paediatrician model of primary care. BMJ Open 2022;12(9):e063449 View
  6. Hynnekleiv I, Sørebø Ø, Grov E. Teknostress hos sykepleiere – ikke bare angst og fobi. Klinisk Sygepleje 2022;36(4):271 View
  7. Görtz M, Byczkowski M, Rath M, Schütz V, Reimold P, Gasch C, Simpfendörfer T, März K, Seitel A, Nolden M, Ross T, Mindroc-Filimon D, Michael D, Metzger J, Onogur S, Speidel S, Mündermann L, Fallert J, Müller M, von Knebel Doeberitz M, Teber D, Seitz P, Maier-Hein L, Duensing S, Hohenfellner M. A Platform and Multisided Market for Translational, Software-Defined Medical Procedures in the Operating Room (OP 4.1): Proof-of-Concept Study. JMIR Medical Informatics 2022;10(1):e27743 View
  8. O’Neill K, Maher J, Laronda M, Duncan F, LeDuc R, Lujan M, Oktay K, Pouch A, Segars J, Tsui E, Zelinski M, Halvorson L, Gomez-Lobo V. Anatomic nomenclature and 3-dimensional regional model of the human ovary: call for a new paradigm. American Journal of Obstetrics and Gynecology 2023;228(3):270 View
  9. Hussain S, Sezgin E, Krivchenia K, Luna J, Rust S, Huang Y. A natural language processing pipeline to synthesize patient-generated notes toward improving remote care and chronic disease management: a cystic fibrosis case study. JAMIA Open 2021;4(3) View
  10. Castell-Díaz J, Miñarro-Giménez J, Martínez-Costa C. Supporting SNOMED CT postcoordination with knowledge graph embeddings. Journal of Biomedical Informatics 2023;139:104297 View
  11. Chomutare T, Tejedor M, Svenning T, Marco-Ruiz L, Tayefi M, Lind K, Godtliebsen F, Moen A, Ismail L, Makhlysheva A, Ngo P. Artificial Intelligence Implementation in Healthcare: A Theory-Based Scoping Review of Barriers and Facilitators. International Journal of Environmental Research and Public Health 2022;19(23):16359 View
  12. Garau N, Orro A, Summers P, De Maria L, Bertolotti R, Bassis D, Minotti M, De Fiori E, Baroni G, Paganelli C, Rampinelli C. Integrating Biological and Radiological Data in a Structured Repository: a Data Model Applied to the COSMOS Case Study. Journal of Digital Imaging 2022;35(4):970 View
  13. Sezgin E, Hussain S, Rust S, Huang Y. Extracting Medical Information From Free-Text and Unstructured Patient-Generated Health Data Using Natural Language Processing Methods: Feasibility Study With Real-world Data. JMIR Formative Research 2023;7:e43014 View
  14. Boustany A, Onwuzo S, Zeid H, Almomani A, Kumar P, Hitawala A, Asaad I. Non‐alcoholic steatohepatitis is independently associated with a history of gestational diabetes mellitus. Journal of Gastroenterology and Hepatology 2023;38(6):984 View
  15. Kreuzthaler M, Brochhausen M, Zayas C, Blobel B, Schulz S. Linguistic and ontological challenges of multiple domains contributing to transformed health ecosystems. Frontiers in Medicine 2023;10 View
  16. Drenkhahn C, Ohlsen T, Wiedekopf J, Ingenerf J. WASP—A Web Application to Support Syntactically and Semantically Correct SNOMED CT Postcoordination. Applied Sciences 2023;13(10):6114 View
  17. Munari E, Scarpa A, Cima L, Pozzi M, Pagni F, Vasuri F, Marletta S, Dei Tos A, Eccher A. Cutting-edge technology and automation in the pathology laboratory. Virchows Archiv 2024;484(4):555 View
  18. BOUSTANY A, ONWUZO S, ZEID H, ALMOMANI A, ASAAD I. ANTIDEPRESSANT MEDICATIONS ARE ASSOCIATED WITH INCREASED RISK OF HOSPITAL-ACQUIRED CLOSTRIDIOIDES DIFFICILE INFECTION: A POPULATION-BASED STUDY. Arquivos de Gastroenterologia 2023;60(3):309 View
  19. Nitola-Mendoza L, Sánchez-Cárdenas M, Rodriguez-Chitiva N, Mora Gutiérrez J, Rodriguez-Pena R, Romero-González G, Bleda Perez M, Cuenca Casbas P, Calsina Berna A, Álvaro Pardo M, Granados Casas V, Garrido Ballart P, Beroiz Groh P, Bover J, Miralles Basseda R, Leiva-Santos J, Alonso-Babarro A, Julià-Torras J. Nomenclatura en cuidados paliativos y de soporte renal: no solo al final de la vida. Nefrología 2024;44(4):475 View
  20. Wolfien M, Ahmadi N, Fitzer K, Grummt S, Heine K, Jung I, Krefting D, Kühn A, Peng Y, Reinecke I, Scheel J, Schmidt T, Schmücker P, Schüttler C, Waltemath D, Zoch M, Sedlmayr M. Ten Topics to Get Started in Medical Informatics Research. Journal of Medical Internet Research 2023;25:e45948 View
  21. Sim J, Huang X, Horan M, Stewart C, Robison L, Hudson M, Baker J, Huang I. Natural language processing with machine learning methods to analyze unstructured patient-reported outcomes derived from electronic health records: A systematic review. Artificial Intelligence in Medicine 2023;146:102701 View
  22. Abad-Navarro F, Martínez-Costa C, Fernández-Breis J. HURON: A Quantitative Framework for Assessing Human Readability in Ontologies. IEEE Access 2023;11:101833 View
  23. Schwab J, Werle S, Hühne R, Spohn H, Kaisers U, Kestler H. The Necessity of Interoperability to Uncover the Full Potential of Digital Health Devices. JMIR Medical Informatics 2023;11:e49301 View
  24. Acharya A, Shrestha S, Chen A, Conte J, Avramovic S, Sikdar S, Anastasopoulos A, Das S. Clinical risk prediction using language models: benefits and considerations. Journal of the American Medical Informatics Association 2024;31(9):1856 View
  25. Li T, Xu K, Chada N, Chen H, Knight M, Antic S, Sandler K, Maldonado F, Landman B, Lasko T. Curating retrospective multimodal and longitudinal data for community cohorts at risk for lung cancer. Cancer Biomarkers 2024:1 View
  26. Zhang R, Ge Y, Xia L, Cheng Y. Bibliometric Analysis of Development Trends and Research Hotspots in the Study of Data Mining in Nursing Based on CiteSpace. Journal of Multidisciplinary Healthcare 2024;Volume 17:1561 View
  27. Curtis K, Gough K, Krishnasamy M, Tarasenko E, Hill G, Keogh S. Central venous access device terminologies, complications, and reason for removal in oncology: a scoping review. BMC Cancer 2024;24(1) View
  28. Xue X, Sun D, Shankar A, Viriyasitavat W, Siarry P. Efficient large-scale biomedical ontology matching with anchor-based biomedical ontology partitioning and compact geometric semantic genetic programming. Journal of Industrial Information Integration 2024;41:100637 View
  29. Nitola-Mendoza L, Sánchez-Cárdenas M, Rodriguez-Chitiva N, Mora Gutiérrez J, Rodriguez-Pena R, Romero-González G, Bleda Pérez M, Cuenca Casbas P, Calsina-Berna A, Álvaro-Pardo M, Granados Casas V, Garrido Ballart P, Beroiz Groh P, Bover J, Miralles Basseda R, Leiva-Santos J, Alonso-Babarro A, Julià-Torras J. Nomenclature in Palliative and Kidney Supportive Care: Not Just at the End-of-Life. Nefrología (English Edition) 2024;44(4):475 View
  30. Hässler S, Lorenzon R, Binvignat M, Ribet C, Roux A, Johanet C, Amouyal C, Amselem S, Berenbaum F, Benveniste O, Cacoub P, Grateau G, Hartemann A, Saadoun D, Salem J, Sellam J, Seksik P, Vicaut E, Mariotti-Ferrandiz E, Rosenzwajg M, Klatzmann D. Clinical correlates of lifetime and current comorbidity patterns in autoimmune and inflammatory diseases. Journal of Autoimmunity 2024;149:103318 View
  31. Abdel-Razeq R, Bitar L, Bitar E, Onwuzo C, Abu-Hammour M, Eren B, Mohamed I, Johnson A, Boustany A, Onwuzo S, Asaad I. Prevalence and risk factors associated with metabolic dysfunction-associated steatohepatitis in patients with Helicobacter pylori infection: A population-based study. World Journal of Hepatology 2024;16(10):1169 View

Books/Policy Documents

  1. Dhiman S, Thukral A, Bedi P. Artificial Intelligence and Speech Technology. View
  2. Li T, Still J, Xu K, Lee H, Cai L, Krishnan A, Gao R, Khan M, Antic S, Kammer M, Sandler K, Maldonado F, Landman B, Lasko T. Medical Image Computing and Computer Assisted Intervention – MICCAI 2023. View
  3. Redondo-Aniorte F, Abad-Navarro F, Fernández-Breis J. Good Practices and New Perspectives in Information Systems and Technologies. View
  4. Xu H, Demner Fushman D, Hong N, Raja K. Natural Language Processing in Biomedicine. View