e.g. mhealth
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Skip search results from other journals and go to results- 18 JMIR Medical Informatics
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The taxonomy resided in a spreadsheet, but without the functionalities of an ontology.
A number of Ontology Engineering Methodologies (OEMs) exist to guide and structure ontology development from a state of informal knowledge to formal representation [16]. Many OEMs have been organized into different classes, including, for example, collaborative, noncollaborative, and custom OEMs [17].
JMIR Med Inform 2025;13:e67589
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We defined the scope of this domain of ontology as epileptic semiology by reference, reused the more authoritative epilepsy-related ontologies and terminology sets as standard terminology, referred to the basic formalized ontology (BFO) as the top-level ontology, and hierarchically arranged the entities according to their domain-neutral framework.
JMIR Med Inform 2024;12:e57727
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The criteria content and the required reintroduction of data model—dependent information are obtained from an automatically generated search ontology [36].
While the expression of eligibility criteria within a specific data model context is well established and adequately discussed in this work, research on a data-agnostic intermediate format for computable eligibility has been sparse in recent years.
JMIR Med Inform 2024;12:e58541
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Use of SNOMED CT in Large Language Models: Scoping Review
The UMLS serves as a thesaurus for biomedical terminology systems such as the Medical Subject Headings, International Classification of Diseases, Gene Ontology, Human Phenotype Ontology, and SNOMED CT, all curated and managed by the United States National Library of Medicine.
JMIR Med Inform 2024;12:e62924
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As requirements for the ontology to achieve the intended goals, we formulated the competency questions (CQs) described in Table 1. CQs specify functional requirements for an ontology and are used to evaluate whether the ontology fulfills the elicited requirements [38]. The use of CQs has been proposed in several ontology engineering methodologies such as the Tropos methodology [39] and the Ne On Methodology framework [40].
JMIR Form Res 2024;8:e53711
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Among these studies, forms of knowledge base include Arden syntax and ontology that have been widely used for formal representation of clinical guidelines and graph-based medical knowledge, as well as XML as a markdown language for web and mobile-based CDSS applications. Specifically, in support of diagnostics and therapeutics recommendations for ectopic pregnancy, ontology has been used for supporting the annotation of medical images (eg, ultrasound images for obstetrics) [26,27].
J Med Internet Res 2024;26:e54737
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Xiao et al [15] used Ontology-Based Data Access to establish a virtual fast health care interoperability resources–based knowledge graph derived from Observational Medical Outcomes Partnership (OMOP) EHR data. This approach facilitates data interoperability with exceptional efficiency and generality.
Although these studies greatly enhance data interoperability, they do not incorporate decision support functions.
3.
J Med Internet Res 2024;26:e54263
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The information artifact ontology (IAO) [31] is part of the open biological and biomedical ontology (OBO) foundry. IAO represents a general abstraction of informational objects (like documents and components within those documents—eg, figures, images). Like many OBO foundry ontologies, IAO uses the basic formal ontology and relation ontology as part of its architecture model. We minimally reused some of the term entities and properties like IAO:image and “denoted by.”
JMIR Med Inform 2024;12:e49613
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Search terms: (((((EHR) OR (EMR)) OR (“Electronic Health Record”)) OR (“Electronic Medical Record”)) AND (((((“Semantic interoperability”) OR ((“data model”) AND (“Semantic interoperability”))) OR ((((“classification”) OR (ontology)) OR (terminology)) AND (“Semantic interoperability”))) OR (((“data content”) OR (“data format”)) AND (“Semantic interoperability”))) OR ((“Semantic interoperability”) AND (standard)))
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The research team first screened all the remaining
JMIR Med Inform 2024;12:e53535
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Some impactful examples of ontologies include the Systematized Nomenclature of Medicine–Clinical Terms [6] and Gene Ontology [7], which are hosted on the National Center for Biomedical Ontology [8] and the OBO Foundry [9]; for example, the National Center for Biomedical Ontology Bio Portal is an open repository of >700 biomedical ontologies [8], whereas the OBO Foundry hosts interoperable biomedical and health ontologies that share a common framework [9].
Online J Public Health Inform 2024;16:e52845
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